The best multicompany accounting software for your business depends on whether you need to keep separate books for multiple organizations or consolidate those organizations into a single set of financial statements.
When keeping the books for multiple organizations, it’s nice to have the ability to add multiple companies to your software without paying for each one. Meanwhile, consolidated financial statements generally require more sophisticated and expensive software. Thus, you need to find the solution that best fits your multicompany accounting needs at the best possible price point.
Here are our five picks for the best accounting software for multiple companies:
- QuickBooks Enterprise: Best overall pick for its sophisticated accounting features
- Wave: Best free online accounting software for up to 15 companies
- QuickBooks Accountant Desktop: Best for independent full-service bookkeepers
- Sage 50 Accounting: Best accounting software for consolidating multiple companies
- SoftLedger: Best for consolidating entities with cryptocurrency transactions
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- Comparison of the Best Multicompany Accounting Software
- QuickBooks Enterprise: Best Overall Multicompany Accounting Software
- QuickBooks Desktop
- Wave: Best Free Online Accounting Software for up to 15 Companies
- QuickBooks Accountant Desktop: Best for Independent Full-service Bookkeepers
- Sage 50 Accounting: Best Accounting for Consolidated Entities
- Sage 50cloud Accounting
- SoftLedger: Best for Consolidating Entities With Cryptocurrency Transactions
- Frequently Asked Questions (FAQs)
- Bottom Line
Comparison of the Best Multicompany Accounting Software
| Price | Number of Users | Number of Organizations | |
|---|---|---|---|
| Starts at $194 per month | 1 to 40 | Unlimited | |
| Visit QuickBooks Desktop | |||
![]() | Free or $16 per month | 1 or unlimited | 15 |
| Visit Wave | |||
![]() | $799 or $1,299 per year | 1 | Unlimited |
| Visit QuickBooks Accountant Desktop | |||
![]() | $607 to $4,546 per year | 1 to 40 | Unlimited |
| Visit Sage 50 Accounting | |||
| Contact sales | 3 | 5 | |
| Visit SoftLedger | |||
| Consolidation Features | Inventory Accounting | Project Tracking | Payroll | Multicurrency Consolidation | |
|---|---|---|---|---|---|
| ✓ | ✓ | ✓ | ✓ | ✓ | |
| Visit QuickBooks Desktop | |||||
![]() | ✕ | ✕ | ✕ | ✓ | ✕ |
| Visit Wave | |||||
![]() | ✕ | ✓ | ✓ | ✓ | ✕ |
| Visit QuickBooks Accountant Desktop | |||||
![]() | ✓ | ✓ | ✓ | ✓ | ✓ |
| Visit Sage 50 Accounting | |||||
| ✓ | ✓ | ✓ | ✕ | ✓ | |
| Visit SoftLedger | |||||
QuickBooks Enterprise: Best Overall Multicompany Accounting Software
Pricing
| Cloud-hosted Pricing Starts At | Desktop Pricing Starts At | |
|---|---|---|
| Gold | $217 per month for one user | $194 per month for one user |
| Platinum | $254 per month for one user | $231 per month for one user |
| Diamond | $446 per month for one user | $389 per month for one user |
Why We Like It
We picked QuickBooks Enterprise because there is no limit on the number of companies that you can set up. While Enterprise is a desktop program, QuickBooks now offers hosted versions that provide the convenience of cloud-based software.
It also has industry-specific editions for contractors, manufacturers and wholesalers, nonprofits, retailers, services, and accountants. Each edition has unique features that’ll be helpful for your business’s specific accounting needs.
Our Evaluation
Pricing isn’t QuickBooks Enterprise’s strongest suit. It is expensive and is not suitable for small businesses on a budget. However, that’s understandable because it offers more advanced features as reflected in its high scores in A/P, A/R, inventory, and project accounting.
On the flip side, QuickBooks Enterprise didn’t score well in ease of use and ease of setup. Our evaluation reveals that these low scores are due to QuickBooks Enterprise being an advanced accounting software, giving it a steep learning curve. Though it has a high monthly price and a steep learning curve, QuickBooks Enterprise remains the best pick in this guide because it is the most powerful QuickBooks product to date.
| Pricing | Starting at $194 per month for one user (for the locally-installed program) |
|---|---|
| Free Trial | N/A |
| A/R and A/P | ✓ |
| Accountant Access | None but can send company file |
| Auto Import of Bank Transactions | ✓ |
| Project Tracking | ✓ |
| Cryptocurrency Accounting | ✕ |
| User Reviews | 4.5 out of 5; read user comments in our QuickBooks Enterprise review |
- Inventory management: QuickBooks Desktop’s robust inventory management features let you track the availability of inventory and the average and total number of items. You can also create purchase orders for vendors and set up alerts when you’re running low on inventory.
- Income and expense tracking: Track your income and expenses easily with QuickBooks Desktop. You can connect your bank and credit card to categorize your transactions. Income and expense items can be seen in one place depending on the type of transaction, such as transactions with customers, vendors, and employee centers.
- Time and project tracking: Tracking time is essential for computing operating and billable expenses. With QuickBooks Desktop, you can clock employee time spent working on tasks and track billable hours, which can be added to invoices by client or employee.
- Live customer support: QuickBooks Desktop offers phone, live chat, and chatbot support. Wave is limited to self-help resources unless you purchase an add-on or upgrade to the paid version for email and live chat support.
- Businesses wanting desktop software: QuickBooks Enterprise doesn’t require an internet connection to run, making it ideal for business owners who have problems with internet connectivity and speed.
- Companies providing a copy of their books to a tax accountant: QuickBooks Enterprise makes it easy to export an accountant’s copy of your QuickBooks file, so your accountant can easily prepare your tax return. This exports prior-year data so that you can continue to work on current-year data.
- Companies seeking strong reporting features: QuickBooks Enterprise offers more than 100 comprehensive and customizable reports plus special reports included in its industry-specific editions.
- Businesses needing inventory accounting: QuickBooks Enterprise has more in-depth inventory management tools than all other providers in this guide. For example, it allows manufacturing companies to track their products using inventory parts and assemblies. Wave lets you add a product or service but not the quantity purchased or sold, which means that it’s unable to calculate your COGS.
Wave: Best Free Online Accounting Software for up to 15 Companies
Pricing
Wave has a free plan (Starter) for accounting and invoicing for one user only and a paid option (Pro) for unlimited users at $16 per month, per business. Pro includes additional features like live chat and email support, bank connections, receipt capture, and discounted credit card processing rates.
You can also purchase add-ons including:
- Bookkeeping support (Wave Advisor): $149 per month (Starter and Pro)
- Assisted payroll (Wave Payroll): $40 per month for tax service states and $20 per month for self-service states plus $6 monthly per employee
- Receipt scanning: $8 monthly or $72 annually; free in Pro
Why We Like It
Whether you’re an entrepreneur with multiple businesses or an accountant handling the books of several freelancers, Wave Starter is a great option if you’re looking for free accounting software that can be used for up to 15 companies. It has impressive reporting capabilities, given that it’s a free service, and it lets you add multiple businesses into just one account. It’s also a great fit for ecommerce companies due to its large number of integrations through Zapier.
Our Evaluation
Wave aced our pricing criterion because of its free plan and also scored high for ease of use and user reviews. However, while it offers many basic accounting features, it does have some limitations. Two of Wave’s strengths are that you can easily manage unpaid bills and invoices, but it doesn’t let you issue credit memos or add tracked expenses to an invoice. If these features are important to you, we suggest looking into QuickBooks Enterprise.
However, Wave has only basic features compared with QuickBooks Enterprise. Its bank reconciliation feature is also very limited, as are its project accounting features. Once again, QuickBooks Enterprise is a good option because we awarded it perfect marks for both. It allows you to create estimates and allocate costs and expenses to a project, and it also has a comprehensive bank reconciliation feature.
| Pricing | Free for one user and 15 companies, or $16 per month, per business, for unlimited users |
|---|---|
| Free Trial | ✕ |
| A/R and A/P | ✓ |
| Accountant Access | ✓ |
| Auto Import of Bank Transactions | Requires the Pro version |
| Project Tracking | ✕ |
| Cryptocurrency Accounting | ✕ |
| User Reviews | 4.40 out of 5; read user comments in our Wave review |
- Free accounting and invoicing: Wave Starter offers basic accounting and invoicing features for free in the Starter plan.
- Sales and income tax tracking: You can add sales taxes on invoices, bills, estimates, and transactions with Wave.
- Receipt scanning: Through your smartphone, you can upload or take a picture of your receipts whenever you create an expense record. This feature supports your records with actual receipts, and the cost is $11 per month in the free plan. You can also upgrade to the paid version for $16 and scan unlimited receipts without any additional costs.
- Businesses looking for free bookkeeping software: The free plan is ideal for a single user and up to 15 companies and its receipt scanning services are only $11 monthly.
- Ecommerce companies: Through Zapier, you can integrate Wave with ecommerce platforms. We selected it as the best ecommerce accounting software for companies using Zapier.
QuickBooks Accountant Desktop: Best for Independent Full-service Bookkeepers
Pricing
There are currently two membership levels available, both with one user:
- ProAdvisor Premier Software Bundle: $799 per year
- ProAdvisor Enterprise Software Bundle: $1,299 per year
Both include QuickBooks Accountant Desktop and other features, but the ProAdvisor Enterprise Software Bundle includes additional software, like QuickBooks Enterprise Desktop Accountant, QuickBooks Mac Desktop 2024, and QuickBooks POS Desktop.
Why We Like It
QuickBooks Accountant Desktop is a must-have for independent bookkeepers with clients who use QuickBooks Desktop. You can import, review, and adjust your clients when they send you an “Accountant’s Copy” of their QuickBooks file.
It’s also a great tool for you to do after-the-fact bookkeeping for an unlimited number of clients. It requires an active QuickBooks Desktop ProAdvisor membership, but the cost of the ProAdvisor program is included with the purchase of Accountant Desktop.
Accountants who provide on-site assistance will find the software especially useful, as they can log into a client’s QuickBooks Desktop program using their own credentials and then have immediate access to their accountant toolbox to help review and fix their client’s books. Industry-specific reports are also available with QuickBooks Accountant Desktop.
Our Evaluation
QuickBooks Desktop Accountant has the same accounting features as QuickBooks Desktop Premier. In our evaluation, QuickBooks Desktop Accountant performed exceptionally well in many areas, as expected for software designed specifically for accountants offering bookkeeping services to QuickBooks users. However, it scored lower in pricing, ease of use, and ease of setup.
The platform is a substantial investment due to its high cost. However, the robust features it offers make it a worthwhile trade-off. As desktop software, it comes with a learning curve, particularly for those accustomed to simpler accounting platforms. While it may initially seem challenging, ease of use will likely improve with continued experience
| Pricing | $799 or $1,299 per year |
|---|---|
| Free Trial | N/A |
| A/R and A/P | ✓ |
| Accountant Access | No live access, but receive a company file from your client |
| Auto Import of Bank Transactions | ✓ |
| Project Tracking | ✓ |
| Cryptocurrency Accounting | ✕ |
| User Reviews | N/A |
- Fixed asset manager: QuickBooks Accountant Desktop’s fixed asset manager is a perfect tool for bookkeepers with clients who need fixed asset accounting. It helps track depreciation, monitor fixed asset purchases, manage disposals, and generate reports, such as amortization schedules and detailed reports.
- Faster client collaboration: There’s no need to schedule a meet-up with the client just to transfer files—with Accountant’s Copy, you and your clients can work together easily and quickly. You can receive files from clients seamlessly and make changes without affecting the client’s files. Adjustments are merged with clients’ files without interrupting their work.
- File accessibility: QuickBooks Accountant Desktop allows you to read client files from the current or prior year versions of the software without upgrading the files. This is especially useful because it allows the client to still access their file if needed without needing to have the software from the same year as your client.
- Full-service payroll: You can also offer full-service payroll, which is very inexpensive to offer payroll for up to 50 clients. This provides a great steady income stream to supplement your other services. Accountants who offer payroll services to their clients can do so for the monthly fee of $55 plus $6 per employee, per month. Read our review of QuickBooks Desktop Payroll for more information about the services provided.
- Accountants with clients who use QuickBooks Desktop: Even though QuickBooks no longer offers Premier and Pro to new customers, QuickBooks Desktop Accountant will continue to be sold so that ProAdvisors can continue to support clients using Premier or Pro.
- Accountants providing on-site assistance: You can log in through your client’s QuickBooks Desktop program to gain immediate access to the special tools included in your QuickBooks Accountant Desktop subscription.
- Accountants wanting access to industry-specific reports: You can toggle to industry-specific editions of QuickBooks Premier to provide clients with reports they may not have access to on their version of QuickBooks.
Sage 50 Accounting: Best Accounting for Consolidated Entities
Pricing
You can purchase Sage 50 Accounting under three subscription plans:
- Pro Accounting: $607 per year with a maximum of one user and one company (cannot consolidate companies)
- Premium Accounting: Ranges from $1,043 per year for one user to $2,391 per year for five users and unlimited companies
- Quantum Accounting: Ranges from $1,780 per year for one user to $4,546 per year for 10 users—custom pricing for up to 40 users and unlimited companies
Why We Like It
We selected Sage 50 as the best accounting software for consolidated entities because it allows for accounting for multiple entities and for the entities to be consolidated into a single set of financial statements. While it is a desktop program, employees and accountants can access the company file through Sage Drive. Sage 50 may be more expensive than other options in this guide, but we consider it very affordable for software that can perform consolidations.
Our Evaluation
Sage 50 aced our rubric in terms of project accounting, reporting, and integrations. It also received high marks for its A/R, A/P, and inventory management features. Its project accounting features include everything from creating projects to assigning project costs and estimates. Like SoftLedger, Sage 50 offers consolidation features, unlike the other providers featured in this guide.
However, Sage 50 lacks a mobile app and is pricier than some competitors, which impacted its score. Therefore, if remote access and affordability are important to you, we recommend Wave. Sage 50 is also difficult to use for business owners without accounting software experience, which affected its ease of use score. Wave is also the better option in this case.
| Pricing | $607 to $4,546 per year |
|---|---|
| Free Trial | None, but you can test drive the platform using sample data |
| A/R and A/P | ✓ |
| Accountant Access | ✕ |
| Auto Import of Bank Transactions | ✓ |
| Project Tracking | ✓ |
| Cryptocurrency Accounting | ✕ |
| User Reviews | 3.8 out of 5; read user comments in our Sage 50 Accounting review. |
- Multientity and multicurrency consolidations: With Sage 50, you can consolidate subsidiaries, whether in the US or overseas. It can help you consolidate separate financial statements of subsidiaries, eliminate intercompany transactions, and account for foreign currency translation gains and losses in the income statement and balance sheet.
- Advanced inventory management: Sage 50’s advanced inventory management lets you monitor stock, manage assemblies, track cost flow, and establish reorder points.
- Project tracking and job costing: Sage 50 offers project tracking plus job costing to make billing easier. You can set up job records, phases, and cost codes. It also lets you estimate profits from jobs and projects while keeping track of expenses incurred through specialized reports.
- Robust collection of reports: There are more than 150 reports available on Sage 50, including specialized reports for the construction, manufacturing, and distribution industries.
- Businesses looking for an alternative to QuickBooks: We chose Sage 50 Accounting as the best QuickBooks alternative for desktop software that can support multiple companies. It can handle foreign currency transactions and translations, and perform job costing, which are features not present in QuickBooks Online.
- Businesses seeking desktop software: Sage 50 is designed to be installed on a desktop computer, but it has the convenience of the cloud.
SoftLedger: Best for Consolidating Entities With Cryptocurrency Transactions
Pricing
As is common with this level of customizable software, you must contact a sales representative for a demo and sales quote. It includes up to three users and five organizations.
Why We Like It
We selected SoftLedger as the best for consolidating entities with cryptocurrency transactions due to its ability to deal with multiple currencies, including cryptocurrencies. Beyond just cryptocurrency accounting, it is a more powerful and customizable solution for consolidating companies than Sage 50. Not surprisingly, this additional power comes at a steeper price.
While we were unable to access SoftLedger to perform our full case study and award it a score, it does provide some important crypto features that are worthy of consideration. The tax treatment of cryptocurrency is very tedious because a gain or loss must be recognized on every cryptocurrency transaction. This is very burdensome to track in a spreadsheet and makes SoftLedger well worth the money if you conduct business in crypto.
| Pricing | Request a quote |
|---|---|
| Free Trial | N/A |
| A/R and A/P | ✓ |
| Accountant Access | ✕ |
| Auto Import of Bank Transactions | ✓ |
| Project Tracking | ✓ |
| Cryptocurrency Accounting | ✓ |
| User Reviews | N/A |
- Cryptocurrency features: SoftLedger is the only software on this list that offers cryptocurrency features. Crypto investors can integrate with crypto exchanges, manage their wallets, and see real-time crypto transactions.
- Business adaptability: Since it has an API, you can modify the software to match your accounting needs. You can build specific accounting functions by programming or creating software connections for integration.
- Easy consolidation accounting: With SoftLedger, you can consolidate your financial statements across subsidiaries and segments and eliminate intercompany transactions and accounts automatically.
- Businesses needing accounting for crypto assets: SoftLedger has a unique cryptocurrency accounting feature that enables you to track and manage crypto-related transactions, such as crypto gains and losses, live market rates, and tax and reporting requirements. You can connect your crypto wallet directly to the software like a bank feed.
- Manufacturing and other inventory-intensive businesses: With SoftLedger, you can track your inventory in real-time, increase or decrease the quantity on hand, and transfer stock between locations. You can track inventory by warehouses so that you’ll know where your stock is located.
- Businesses with an in-house development team: SoftLedger’s platform has a fully integrated API that can be customized based on the exact needs of your business. This is particularly ideal for businesses working with in-house developers.
How We Evaluated Multicompany Accounting Software
How to Choose Your Multicompany Accounting Software
In choosing the best multicompany accounting software for your business, the process can be quite different from selecting a tool for a single company, as there are added factors that you need to consider. Let’s go over each.
- Determine the number of companies you need to manage. Some multicompany software offer unlimited companies, while others don’t. However, this shouldn’t be an automatic deal breaker, especially if you need to manage only a few companies.
- Set your budget. More advanced multicompany software can be priced on the higher side. It’s important to set a budget first so that you can single out an accounting solution that is way above your monthly budget for software subscriptions.
- Check core features. The best multicompany accounting program must provide all the necessary accounting features such as:
- Banking and cash management
- A/R and invoicing
- A/P and billing
- Inventory management and COGS tracking
- Payroll management
- Tax tracking
- Fixed asset tracking
- Check for specific features. If your business operates in a specific industry that requires unique features, go with a tool with industry-specific capabilities. This ensures your accounting processes are tailored to the specialized needs of your industry, streamlining your workflow.
- Ensure scalability. Lastly, you’ll want multicompany software that can grow with your business—switching platforms because your current software can’t meet your expanding needs is a hassle. To avoid this, it’s best to select a scalable solution from the start so that you’re ready when it’s time to scale up.
Frequently Asked Questions (FAQs)
What is multicompany accounting software?
Multicompany accounting software is a tool that enables accountants to manage multiple operations, locations, and companies in a single program.
Why do businesses need multicompany accounting software?
Businesses with multiple companies or subsidiaries can benefit from multicompany accounting software as it provides a centralized platform to manage financial data, streamline reporting, and ensure consistency in accounting practices across all entities.
Can multicompany accounting software handle multiple currencies?
Yes, there are robust multicompany accounting systems that support multiple currencies to accommodate businesses operating in different regions with diverse currencies.
How many companies can you run on QuickBooks Desktop?
One QuickBooks Desktop license can be used to keep the books for an unlimited number of companies.
How much does Sage 50 Accounting cost?
Sage 50 Accounting charges $595 per year for Pro Accounting with a maximum of one user and one company. Premium Accounting subscribers will pay anywhere from $970 per year for one user to $2,222 per year for five users and unlimited companies. Quantum Accounting subscriptions run from $1,610 per year for one user and $4,108 per year for 10 users, with custom pricing for up to 40 users and unlimited companies.
Bottom Line
Multicompany accounting software can serve a variety of functions. If your business is run through two or more companies or entities, then QuickBooks Enterprise will allow you to keep separate books for each company. However, if you need to consolidate those companies into one set of financial statements, you’ll need Sage 50 or SoftLedger. Finally, if you’re an independent accountant or bookkeeper looking to provide full-service accounting to unlimited companies, QuickBooks Accountant Desktop will serve you well.


