Melio vs QuickBooks Bill Pay Comparison | Fit Small Business

Melio vs QuickBooks Bill Pay Comparison

Melio is known for its streamlined approach to bill payment and vendor management, providing a cost-effective option for businesses looking to optimize their cash flow without platform fees. Meanwhile, QuickBooks Bill Pay is deeply integrated into QuickBooks Online, the industry-leading small business accounting software. While Melio has no platform fees, QuickBooks Bill Pay is $90…

Nov 20, 2024
11 minute read

Melio is known for its streamlined approach to bill payment and vendor management, providing a cost-effective option for businesses looking to optimize their cash flow without platform fees. Meanwhile, QuickBooks Bill Pay is deeply integrated into QuickBooks Online, the industry-leading small business accounting software. While Melio has no platform fees, QuickBooks Bill Pay is $90 per month for unlimited payments, in addition to your monthly subscription to QuickBooks Online (ranges from $35 to $235).

In this Melio vs QuickBooks comparison, I’ll review the key features and benefits of both providers to help you make an informed decision for your financial management needs. Ultimately, your choice should be driven by the specific needs and priorities of your business, whether it’s simplifying bill payments or managing a wide range of financial tasks:

  • Melio: Great for businesses seeking a standalone A/P and A/R solution that also integrates with QuickBooks Online
  • QuickBooks Bill Pay: Best for businesses seeking a robust accounting software that includes basic bill pay features

Melio vs QuickBooks Bill Pay: Quick Comparison


Melio logo.QuickBooks logo
Fit Small Business Rating (out of 5)3.8 ★4.4 ★
Monthly Pricing$0 to $55$0 to $90 for QuickBooks Bill Pay, plus $35 to $235 for QuickBooks Online
Number of UsersUnlimited1 to 25, depending on plan
Accounts Receivable (A/R)Limited
Accounts Payable (A/P)
Customizable Account Permissions
Approval WorkflowsElite only
Batch Payments
Import/Export Data
Mobile AppiOS and AndroidiOS and Android
Payment in Multiple Currencies
Audit Trails
Short-term FinancingVia QuickBooks Capital
Vendor Portal

Visit MelioVisit QuickBooks Bill Pay

Use Cases & Pros & Cons

  • Businesses seeking a standalone A/P solution: We selected Melio as one of the leading A/P software because of its low-cost platform fees and minimal transaction fees. It’s good for users who don’t process many transactions per month but still need exclusive A/P software for tracking bills efficiently—and because it’s standalone software, you don’t have to pay any additional fees, like you do with QuickBooks Bill Pay.
  • Businesses wanting an A/R and A/P tool that integrates with QuickBooks: Unlike QuickBooks Bill Pay, which only integrates with QuickBooks, Melio integrates with QuickBooks, FreshBooks, Xero, and more, allowing businesses to sync their bill payment data with their accounting records seamlessly. This integration can streamline financial management and ensure accurate bookkeeping.
  • Businesses struggling with cash flow: Melio lets you pay bills with a credit card and then sends a check to the vendor. This feature isn’t offered with QuickBooks Bill Pay. Paying with a credit card and delaying when the funds leave your account will allow you to extend your float and may also earn you extra points, miles, or cash back.
Melio logo

Overall Score: 3.80 / 5

RATING CRITERIAPricing
3.50 out of 5
General A/P Features
3.50 out of 5
Advanced A/P Features
4.00 out of 5
Ease of Use
4.30 out of 5

Pros

  • Integrates with QuickBooks Online and Xero
  • Doesn’t require your vendors to have a Melio account to receive payments
  • Uses optical character recognition (OCR) or artificial intelligence (AI) for billing

Cons

  • Charges each additional user $10 per month with paid plans
  • Offers only live chat and email support in the free tier
  • Can only process payments to businesses, not individuals

Read our Melio review


Read our Melio review

Visit Melio

Looking for just an A/P platform for your small business? Our guide to the

best A/P software

covers the pricing and features of different solutions. We selected Melio as the best free standalone A/P platform.

User Reviews: Tie


Melio logo.QuickBooks logo
Average Rating on Third-party Sites4.15[1][2]4.15[3][4]
Users LikeIt can integrate with both QuickBooks Online and XeroIts interface is user-friendlyCustomer support reps are friendlyYou can track vendors and contractors for issuing 1099sYou can upload or import invoices to prefill billsYou can assign user roles and permissions
Users DislikePayments to vendors can be slow and unsuccessfulCommunication regarding technical issues can be unreliablePayment approval workflows are only available with the most expensive planFree plan only offers five ACH paymentsYou must also factor in the additional cost of QuickBooks Online

I could not find specific reviews for QuickBooks Bill Pay, but I looked at how users scored QuickBooks Online. Both Melio and QuickBooks Online received mostly positive feedback, and since the average rating is exactly the same, I called this category a tie.

One satisfied user shared that Melio is easy to set up and use and that its user interface is very intuitive. They also commented on the friendly customer support reps, although other reviewers reported that it can be difficult to get a hold of someone when needing technical support. I commend Melio’s ability to integrate with both QuickBooks and Xero if you require accounting software integration.

On the downside, some users have complained about slow or unsuccessful payments to vendors. Others felt some things that seem so simple are overly complicated.

As of this writing, here’s how Melio is rated on top review websites:

  • Capterra[1]: 4.2 out of 5 from almost 380 reviews
  • Trustpilot[2]: 4.1 out of 5 from about 1,350 reviews

QuickBooks Online received high praise for its ease of use and customization options, as well as its ability to track vendors and contractors for issuing 1099s. One user commented on the added benefit of assigning user roles and permissions with the Elite plan. Because Melio isn’t a double-entry accounting system, QuickBooks is more comprehensive in many areas.

Looking at the flip side, a reviewer was critical of the fact that the payment approval workflows are only available with the most expensive plan. Also, another shared that a subscription to QuickBooks Online is also required, which comes at an additional cost.

QuickBooks Online earned the following average scores on popular review sites:

  • Software Advice[3]: 4.3 out of 5 from over 7,500 reviews
  • G2[4]: 4.0 out of 5 from around 3,300 reviews
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Pricing: Melio Wins


Melio logo.QuickBooks logo
Fit Small Business Score3.5 out of 44.0 out of 5
Monthly Pricing
  • Go: $0, includes five free ACH payments per month and 10 free syncs with QuickBooks Online and Xero
  • Core: $25, includes 20 free ACH payments per month and unlimited 2-way autosync with QuickBooks Online and Xero
  • Boost: $55, includes 50 free ACH payments per month and 2-way autosync with QuickBooks Desktop

The Core and Boost plans charge an additional $10 per user, per month. Extra ACH payments are 50 cents per transaction.

  • Basic: $0, includes five free ACH payments per month, automated bill creation, and automatic transaction matching
  • Premium: $15, includes everything in Basic plus 40 free ACH payments per month and unlimited 1099 filing
  • Elite: $90, includes everything in Premium plus roles and permissions and bill approval workflows

Extra ACH payments for Basic and Premium are 50 cents per transaction. In addition to the Bill Pay subscription, users must also have a QuickBooks Online subscription: 

  • Simple Start: $35
  • Essentials: $65
  • Plus: $99
  • Advanced: $235
Number of Users Included1 ($10 monthly per additional seat for the Core and Boost plans)1 to 25, depending on your QuickBooks Online subscription
Billable ClientsUnlimited10,000 to 100,000
ePayment/ACH Transaction Fees$0, extra transactions fees above the allotted amount are 50 cents each$0 to $90 per month for QuickBooks Bill Pay, which ranges from 5 free to unlimited per month
Check Mailing Fee$1.50 per check payment$1.50 per check payment
Invoice Mailing FeeN/AN/A
Payment by Debit or Credit Card2.9% of payment (applies to payer)N/A
International Wire Transfer (Local Currency)N/AN/A
International Wire Transfer (USD)$20 flat fee or 2.9% when paying with cardN/A
Faster ACH Payments1% of payment (up to $30) for same-day deliveryN/A
Faster Check Payments$20 flat fee within three business daysN/A
Free TrialNo free trial but 90% off paid plans for the first 3 months30 days

It was difficult for me to compare the pricing of QuickBooks vs Melio because Bill Pay and A/P management is just a small part of what QuickBooks offers. While both offer a free option, Melio’s highest paid tier is less expensive ($55 a month) than QuickBooks Bill Pay’s top plan ($90 monthly). Also, QuickBooks Online’s Bill Pay free option is very limited and requires a subscription to QuickBooks Online, which requires additional fees.

Because of its additional A/P services, I selected Melio as the clear leader in this category. Despite its lower rating, I found its affordability and flexibility of plans along with its ability to accommodate unlimited users extremely attractive.

It offers many services on its standalone platform that are unavailable with QuickBooks Bill Pay—namely payment by debit or credit card, international wire transfers, and faster ACH and check payments. However, you’ll probably want accounting software for your business, so be sure to factor that cost into your decision.

Features: QuickBooks Bill Pay Wins


Melio logo.QuickBooks logo
A/P and A/R Features ✓
Compatible Accounting SoftwareQuickBooks, Xero, FreshBooks, Business CentralQuickBooks Online  
Connect Bank & Credit Card Accounts
Approval WorkflowsElite only
Batch Payments
Import/Export Data
International Payments
Autocapture Bills and Receipts
Send Invoices & Track Collections
OCR
Mobile AppiOS and AndroidiOS and Android
Customizable User PermissionsElite Only
Audit Trails
Team Collaboration Tools 
Vendor Portal 
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When it comes to notable features, QuickBooks Online dominates with the ability to view audit trails, set up customizable account permissions, and access team collaboration tools, so I chose it as the winner of this category. You can also send international payments with Melio using US dollars—a feature unavailable with QuickBooks Online.

Melio provides short-term financing through its Pay Over Time feature, which enables users to finance outstanding bills for up to 12 months. QuickBooks users can access financing with terms of 6 to 24 months through QuickBooks Capital, but applying is not as simple as Melio’s financing, which is integrated within the bill pay feature.

Both providers, however, let you send invoices and track collections, connect your bank and credit card accounts, use OCR, process batch payments, import/export data, and autocapture receipts and bills. Neither QuickBooks nor Melio provide a vendor portal.

General A/P Features: QuickBooks Bill Pay Wins


Melio logo.QuickBooks logo
Fit Small Business Score3.5 out of 55.0 out of 5
Record Purchase Orders
Short-pay an Invoice
Recurring Bills
Set Default Cost For Invoice Items

While both tools offer robust A/P features, QuickBooks Online provides two features that Melio doesn’t—purchase orders and the ability to print checks directly from the software. In addition, Melio requires an accounting software integration to perform many basic A/P functions, like applying vendor credits to new bills and viewing transactions by vendor.

Advanced A/P Features: Melio Wins


Melio logo.QuickBooks logo
Fit Small Business Score4.0 out of 53.7 out of 5
Automatic Bill Capture ✓
OCR
1099 Contractor Payments
Bill Approvals
Intelligent Virtual Assistant

I graded Melio higher than QuickBooks Bill Pay for advanced features because of the available intelligent virtual assistant and the bill approval workflow. However, both solutions provide helpful advanced features like automatic bill capture, OCR for creating bill entries from scans, and managing 1099 contractor payments.

A/R: QuickBooks Online Wins


Melio logo.QuickBooks logo
Recurring Invoices ✓
Create & Send Invoices
Add Logo to Invoice
Invoice Customization
Send Estimates & Sales Receipts
Sales Tax Tracking

Melio’s A/R features are limited to sending either recurring or individual invoices, and the only customization option is to upload your logo. QuickBooks offers a variety of customization options that include a variety of templates, changing color or fonts, adding a custom message, and uploading your logo. You can also send estimates and sales receipts to customers, as well as track sales taxes. It is for this reason that QuickBooks Online came out on top in my evaluation.

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Ease of Use: Tie


Melio logo.QuickBooks logo
Fit Small Business Score4.3 out of 54.8 out of 5
Overall Ease of UseEasyEasy
AccessibilityCloudCloud
Online Help Section
User-friendly Dashboard

Even though QuickBooks Bill Pay scored a little higher, I declared this category a tie because both platforms are intuitive and user-friendly for their intended purposes. Melio may be considered more straightforward because of its limited features, but QuickBooks Online is relatively easy to learn compared with other accounting software. Check out our series of free QuickBooks tutorials for more information.

Mobile App: QuickBooks Online Wins


Melio logo.QuickBooks logo
AccessibilityiOS and AndroidiOS and Android
Pay Bills
Invoice Customers
Send Estimates & Sales Receipts
Assign Expenses to Customers or Projects 
Reconcile Accounts 
Bill/Receipt Scanning 
Mileage & GPS Tracking 
Financial Reports 
Time Tracking 

Melio’s mobile app is very limited, without access to A/R features. Meanwhile, you can perform most of the same features on QuickBooks Online’s app as on the web platform. These features include creating and sending invoices, assigning expenses to customers or projects, sending estimates and sales receipts, paying bills, reconciling accounts, bill and receipt scanning, and mileage and GPS tracking. It is due to these features that I selected QuickBooks Online as the leader in this criterion.

Customer Support: QuickBooks Online Wins


Melio logo.QuickBooks logo
Customer Support HoursMonday through Friday, 9 a.m. to 8 p.m. Eastern timeMonday through Friday, 9 a.m. to 9 p.m. ET
Saturday, 9 a.m. to 6 p.m. ET

 

Email Support
Live Chat Support
Searchable Knowledge Base
Online Help Resources
Community Support
Phone Support

QuickBooks Online also takes the top spot when it comes to customer support, with access to QuickBooks Online’s support in various forms. While both Melio and QuickBooks Online offer email and live chat support and searchable knowledge base and online help resources, only QuickBooks Online provides community and phone support after you submit an online form. If you sign up for one of Melio’s paid plans, you have access to either priority or premium customer support, but the website doesn’t specify what that includes.

How I Evaluated QuickBooks vs Melio

The Fit Small Business accounting team developed a rubric to determine the best A/P software, assigning certain percentages for each criterion and different weights for subcriteria. Given that, I was able to evaluate and compare the pricing, general features, specific features, and ease of use of Melio and QuickBooks Bill Pay.

Methodology weights
Pricing 20%
General features 20%
Accounts payable features 30%
User experience 20%
Mobile app 10%

I evaluate pricing based on how each platform compares to alternatives in the market once core AP functionality is required. I score products on a relative scale from least to most expensive, focusing on real-world costs rather than entry-level pricing that excludes key features.

I use this category to assess the foundational capabilities of each platform, including invoice capture accuracy, accounting system integration, reporting visibility, security controls, and multi-entity support. These features determine whether a product can reliably support AP operations as complexity increases.

This is the most heavily weighted category in my evaluation. I focus on how effectively each platform automates core AP workflows such as three-way matching, approvals, duplicate detection, payment execution, and early-payment discount handling.

I evaluate how intuitive and efficient the platform is for both internal teams and vendors. This includes vendor self-service, exception resolution, document management, onboarding ease, and fraud-related usability factors that influence adoption and daily productivity.

I assess mobile functionality based on how well users can review, approve, and manage invoices on the go. I look at approval depth, notifications, capture accuracy, security, and offline access, recognizing that mobile plays a supporting — but important — role in AP workflows.

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Frequently Asked Questions (FAQs)

Yes. Melio primarily focuses on integrating with QuickBooks Online, but it also offers integrations with Xero.

QuickBooks Online subscribers will have to pay bills through QuickBooks Bill Pay by default, but they can still choose to integrate Melio with their QuickBooks Online account through the QuickBooks App Store.

Yes, QuickBooks Online provides live bookkeeping support in the form of QuickBooks Live Bookkeeping, which starts at $300 per month. You’ll receive access to a team of certified bookkeeping professionals who will provide monthly bookkeeping services and live support through video chat. For more information, read our review of QuickBooks Live.

Yes, you can customize templates for invoices, sales receipts, and reports in QuickBooks Online. You can upload your logo, change colors, and tailor them to your business branding.

Bottom Line

Melio and QuickBooks Online are both valuable tools in the world of business finance, each excelling in its respective niche. Melio’s focus on bill payment automation—both as a QuickBooks integration and standalone platform—and its cost-effective approach make it a compelling choice for businesses seeking streamlined vendor management. However, I selected QuickBooks as the best overall because of its strong accounting features.


User review references:

[1]Capterra | Melio
[2]Trustpilot | Melio
[3]Software Advice | QuickBooks Online
[4]G2 | QuickBooks Online

Danielle Bauter

Danielle Bauter has 25 years of experience as a Full-Charge Bookkeeper and has owned her own bookkeeping and payroll service for over two decades, working with various accounting software.

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