How to Print Payroll Checks in QuickBooks Online in 6 Steps

With QuickBooks Payroll, you can pay employees via same- or next-day direct deposit and print paper checks using your own printer. To print QuickBooks payroll checks, you’ll need to purchase the proper check stock, adjust your printer settings so that everything prints in alignment, and run payroll for at least one employee.

Step 1: Purchase Check Stock

QuickBooks Online Payroll lets you print checks on blank paper or with pre-printed checks. QuickBooks says it does not print on third-party checks. Its online payroll only works with two kinds of paycheck styles:

• Voucher checks with one pay stub for your employee
• Voucher checks with a pay stub for your employee and one for you

You can purchase checks from QuickBooks directly. It offers three styles with different levels of anti-counterfeiting measures such as watermarks, and prices start at $36.99 for 50. See the styles and pricing on the QuickBooks website.

Step 2: Check That Employees Are in the System

You need to have your payroll set up before you can print a paycheck. (See our how-to guide on QuickBooks Payroll setup.) When you first input your employees, you’ll be given the option of how you pay them. If you choose paper checks, the system automatically creates a paycheck to print when you are ready.

Step 3: Set Up Check Printing

Before doing a full paycheck run, it’s a good idea to run a sample to make sure you have the right parameters and everything is aligned properly.

Go to Settings, and then select Payroll settings.

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Under Printing, you’ll see the current setting. If it is wrong, click on the pencil to edit. You can print on blank paper or QuickBooks pre-printed check stock.

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If using blank paper, click Save to save changes. If using pre-printed checks, it will ask if you wish to print one stub or two stubs. Make your selection and click Save.

If using pre-printed checks, you want to check the alignment. You should check alignment again whenever you use a different browser or application. You will use blank paper and a blank check to set alignment.

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Click on Align check. A side window opens with the instructions. They are simple and self-explanatory. After checking the alignment manually, run a paycheck with a blank check to ensure everything is properly aligned. When satisfied, click Save to close the side window.

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QuickBooks Payroll check alignment instructions: Click Save in the lower right corner of the screen to save all changes and exit.

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Step 4: Load Your Checks or Paper in the Printer

Be sure the checks are facing the correct direction. If using a different browser, you should recheck the alignment before doing a print run.

Step 5: Run Payroll

See our guide for specific instructions on how to run your payroll.

Step 6: Print Checks

The Overview tab in Payroll should direct you to run payroll, or you will see it in the shortcut list. Click on View paycheck list.

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Select the names of the checks you want to print. Then click Print.

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A new window will open up with the checks in PDF. Make sure the information is correct, then select Print on your browser (usually in the upper right corner).

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Bottom Line

QuickBooks Online Payroll, a top-rated payroll service, makes it easy to print paychecks for employees. If your employees prefer direct deposit, check out our article on how to set up QuickBooks Direct Deposit.

If you’re not yet using QuickBooks Online to manage your small business accounting, check out our 2021 guide to the best small business accounting software, where QBO ranks #1.